Publikationer i DiVA – Fredrik Pontén
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An immune score reflecting pro- and anti-tumoural balance of tumour microenvironment has major prognostic impact and predicts immunotherapy response in solid cancers
Ingår i EBioMedicine, 2023.
DOI för An immune score reflecting pro- and anti-tumoural balance of tumour microenvironment has major prognostic impact and predicts immunotherapy response in solid cancers Ladda ner fulltext (pdf) av An immune score reflecting pro- and anti-tumoural balance of tumour microenvironment has major prognostic impact and predicts immunotherapy response in solid cancers
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Imaging of fibrogenesis in the liver by [18F]TZ-Z09591, an Affibody molecule targeting platelet derived growth factor receptor β
Ingår i EJNMMI Radiopharmacy and Chemistry, 2023.
DOI för Imaging of fibrogenesis in the liver by [18F]TZ-Z09591, an Affibody molecule targeting platelet derived growth factor receptor β Ladda ner fulltext (pdf) av Imaging of fibrogenesis in the liver by [18F]TZ-Z09591, an Affibody molecule targeting platelet derived growth factor receptor β
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Next generation pan-cancer blood proteome profiling using proximity extension assay
Ingår i Nature Communications, 2023.
DOI för Next generation pan-cancer blood proteome profiling using proximity extension assay Ladda ner fulltext (pdf) av Next generation pan-cancer blood proteome profiling using proximity extension assay
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Spatial immunophenotyping of the tumour microenvironment in non-small cell lung cancer
Ingår i European Journal of Cancer, s. 40-52, 2023.
DOI för Spatial immunophenotyping of the tumour microenvironment in non-small cell lung cancer Ladda ner fulltext (pdf) av Spatial immunophenotyping of the tumour microenvironment in non-small cell lung cancer
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Antibody Validation for Estrogen Receptor Beta
Ingår i Estrogen Receptors. Methods in Molecular Biology, s. 1-23, 2022.
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Combined expression of HOXA11 and CD10 identifies endometriosis versus normal tissue and tumors
Ingår i Annals of Diagnostic Pathology, 2022.
DOI för Combined expression of HOXA11 and CD10 identifies endometriosis versus normal tissue and tumors Ladda ner fulltext (pdf) av Combined expression of HOXA11 and CD10 identifies endometriosis versus normal tissue and tumors
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Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level
Ingår i Nature Communications, 2022.
DOI för Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level Ladda ner fulltext (pdf) av Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level
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Annotation of pituitary neuroendocrine tumors with genome-wide expression analysis
Ingår i Acta neuropathologica communications, 2021.
DOI för Annotation of pituitary neuroendocrine tumors with genome-wide expression analysis
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ELTD1-deletion reduces vascular abnormality and improves T-cell recruitment after PD-1 blockade in glioma.
Ingår i Neuro-Oncology, s. 398-411, 2021.
DOI för ELTD1-deletion reduces vascular abnormality and improves T-cell recruitment after PD-1 blockade in glioma. Ladda ner fulltext (pdf) av ELTD1-deletion reduces vascular abnormality and improves T-cell recruitment after PD-1 blockade in glioma.
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Infiltration of NK and plasma cells is associated with a distinct immune subset in non‐small cell lung cancer
Ingår i Journal of Pathology, s. 243-256, 2021.
DOI för Infiltration of NK and plasma cells is associated with a distinct immune subset in non‐small cell lung cancer Ladda ner fulltext (pdf) av Infiltration of NK and plasma cells is associated with a distinct immune subset in non‐small cell lung cancer
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The noncoding MIR100HG RNA enhances the autocrine function of transforming growth factor beta signaling
Ingår i Oncogene, s. 3748-3765, 2021.
DOI för The noncoding MIR100HG RNA enhances the autocrine function of transforming growth factor beta signaling Ladda ner fulltext (pdf) av The noncoding MIR100HG RNA enhances the autocrine function of transforming growth factor beta signaling
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The prognostic impact of the tumour stroma fraction: A machine learning-based analysis in 16 human solid tumour types
Ingår i EBioMedicine, 2021.
DOI för The prognostic impact of the tumour stroma fraction: A machine learning-based analysis in 16 human solid tumour types Ladda ner fulltext (pdf) av The prognostic impact of the tumour stroma fraction: A machine learning-based analysis in 16 human solid tumour types
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Blood-derived biomarkers correlate with clinical progression in Duchenne muscular dystrophy
Ingår i JOURNAL OF NEUROMUSCULAR DISEASES, s. 231-246, 2020.
DOI för Blood-derived biomarkers correlate with clinical progression in Duchenne muscular dystrophy Ladda ner fulltext (pdf) av Blood-derived biomarkers correlate with clinical progression in Duchenne muscular dystrophy
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CDX2: A Prognostic Marker in Metastatic Colorectal Cancer Defining a Better BRAF Mutated and a Worse KRAS Mutated Subgroup
Ingår i Frontiers in Oncology, 2020.
DOI för CDX2: A Prognostic Marker in Metastatic Colorectal Cancer Defining a Better BRAF Mutated and a Worse KRAS Mutated Subgroup Ladda ner fulltext (pdf) av CDX2: A Prognostic Marker in Metastatic Colorectal Cancer Defining a Better BRAF Mutated and a Worse KRAS Mutated Subgroup
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Metastatic colorectal carcinomas with high SATB2 expression are associated with better prognosis and response to chemotherapy: a population-based Scandinavian study
Ingår i Acta Oncologica, s. 284-290, 2020.
DOI för Metastatic colorectal carcinomas with high SATB2 expression are associated with better prognosis and response to chemotherapy: a population-based Scandinavian study Ladda ner fulltext (pdf) av Metastatic colorectal carcinomas with high SATB2 expression are associated with better prognosis and response to chemotherapy: a population-based Scandinavian study
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Molecular characterization of a large unselected cohort of metastatic colorectal cancers in relation to primary tumor location, rare metastatic sites and prognosis
Ingår i Acta Oncologica, s. 417-426, 2020.
DOI för Molecular characterization of a large unselected cohort of metastatic colorectal cancers in relation to primary tumor location, rare metastatic sites and prognosis Ladda ner fulltext (pdf) av Molecular characterization of a large unselected cohort of metastatic colorectal cancers in relation to primary tumor location, rare metastatic sites and prognosis
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Proximity Ligation Assay as a Tool for Antibody Validation in Human Tissues
Ingår i Journal of Histochemistry and Cytochemistry, s. 515-529, 2020.
DOI för Proximity Ligation Assay as a Tool for Antibody Validation in Human Tissues
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A deep proteome and transcriptome abundance atlas of 29 healthy human tissues
Ingår i Molecular Systems Biology, 2019.
DOI för A deep proteome and transcriptome abundance atlas of 29 healthy human tissues Ladda ner fulltext (pdf) av A deep proteome and transcriptome abundance atlas of 29 healthy human tissues
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Consequences of a high incidence of microsatellite instability and BRAF-mutated tumors: A population-based cohort of metastatic colorectal cancer patients
Ingår i Cancer Medicine, s. 3623-3635, 2019.
DOI för Consequences of a high incidence of microsatellite instability and BRAF-mutated tumors: A population-based cohort of metastatic colorectal cancer patients Ladda ner fulltext (pdf) av Consequences of a high incidence of microsatellite instability and BRAF-mutated tumors: A population-based cohort of metastatic colorectal cancer patients
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LIPG-promoted lipid storage mediates adaptation to oxidative stress in breast cancer
Ingår i International Journal of Cancer, s. 901-915, 2019.
DOI för LIPG-promoted lipid storage mediates adaptation to oxidative stress in breast cancer Ladda ner fulltext (pdf) av LIPG-promoted lipid storage mediates adaptation to oxidative stress in breast cancer
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Prognostic Impact of Tumor Cell Programmed Death Ligand 1 Expression and Immune Cell Infiltration in NSCLC
Ingår i Journal of Thoracic Oncology, s. 628-640, 2019.
DOI för Prognostic Impact of Tumor Cell Programmed Death Ligand 1 Expression and Immune Cell Infiltration in NSCLC Ladda ner fulltext (pdf) av Prognostic Impact of Tumor Cell Programmed Death Ligand 1 Expression and Immune Cell Infiltration in NSCLC
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Quantification and discovery of sequence determinants of protein-per-mRNA amount in 29 human tissues
Ingår i Molecular Systems Biology, 2019.
DOI för Quantification and discovery of sequence determinants of protein-per-mRNA amount in 29 human tissues Ladda ner fulltext (pdf) av Quantification and discovery of sequence determinants of protein-per-mRNA amount in 29 human tissues
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Stroma-normalised vessel density predicts benefit from adjuvant fluorouracil-based chemotherapy in patients with stage II/III colon cancer
Ingår i British Journal of Cancer, s. 303-311, 2019.
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Systematic assessment of antibody selectivity in plasma based on a resource of enrichment profiles
Ingår i Scientific Reports, 2019.
DOI för Systematic assessment of antibody selectivity in plasma based on a resource of enrichment profiles Ladda ner fulltext (pdf) av Systematic assessment of antibody selectivity in plasma based on a resource of enrichment profiles
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Tumoral pyruvate kinase L/R as a predictive marker for the treatment of renal cancer patients with sunitinib and sorafenib
Ingår i Journal of Cancer, s. 3224-3231, 2019.
DOI för Tumoral pyruvate kinase L/R as a predictive marker for the treatment of renal cancer patients with sunitinib and sorafenib Ladda ner fulltext (pdf) av Tumoral pyruvate kinase L/R as a predictive marker for the treatment of renal cancer patients with sunitinib and sorafenib
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Combined ASRGL1 and p53 immunohistochemistry as an independent predictor of survival in endometrioid endometrial carcinoma
Ingår i Gynecologic Oncology, s. 173-180, 2018.
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Mining the Human Tissue Proteome for Protein Citrullination
Ingår i Molecular & Cellular Proteomics, s. 1378-1391, 2018.
DOI för Mining the Human Tissue Proteome for Protein Citrullination
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Novel Multiomics Profiling of Human Carotid Atherosclerotic Plaques and Plasma Reveals Biliverdin Reductase B as a Marker of Intraplaque Hemorrhage
Ingår i JACC-BASIC TO TRANSLATIONAL SCIENCE, s. 464-480, 2018.
DOI för Novel Multiomics Profiling of Human Carotid Atherosclerotic Plaques and Plasma Reveals Biliverdin Reductase B as a Marker of Intraplaque Hemorrhage Ladda ner fulltext (pdf) av Novel Multiomics Profiling of Human Carotid Atherosclerotic Plaques and Plasma Reveals Biliverdin Reductase B as a Marker of Intraplaque Hemorrhage
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U-CAN: a prospective longitudinal collection of biomaterials and clinical information from adult cancer patients in Sweden.
Ingår i Acta Oncologica, s. 187-194, 2018.
DOI för U-CAN: a prospective longitudinal collection of biomaterials and clinical information from adult cancer patients in Sweden. Ladda ner fulltext (pdf) av U-CAN: a prospective longitudinal collection of biomaterials and clinical information from adult cancer patients in Sweden.
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A nonsense mutation in CEP55 defines a new locus for a Meckel-like syndrome, an autosomal recessive lethal fetal ciliopathy.
Ingår i Clinical Genetics, s. 510-516, 2017.
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A specific antibody to detect transcription factor T-Pit: a reliable marker of corticotroph cell differentiation and a tool to improve the classification of pituitary neuroendocrine tumours
Ingår i Acta Neuropathologica, s. 675-677, 2017.
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A subcellular map of the human proteome
Ingår i Science, 2017.
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A systematic search strategy identifies cubilin as independent prognostic marker for renal cell carcinoma
Ingår i BMC Cancer, 2017.
DOI för A systematic search strategy identifies cubilin as independent prognostic marker for renal cell carcinoma Ladda ner fulltext (pdf) av A systematic search strategy identifies cubilin as independent prognostic marker for renal cell carcinoma
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Breast cancer in young women and prognosis: How important are proliferation markers?
Ingår i European Journal of Cancer, s. 278-289, 2017.
DOI för Breast cancer in young women and prognosis: How important are proliferation markers?
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Cetuximab sensitivity of head and neck squamous cell carcinoma xenografts is associated with treatment-induced reduction in EGFR, pEGFR, and pSrc.
Ingår i Journal of Oral Pathology & Medicine, s. 717-724, 2017.
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High RBM3 expression is associated with an improved survival and oxaliplatin response in patients with metastatic colorectal cancer
Ingår i PLOS ONE, 2017.
DOI för High RBM3 expression is associated with an improved survival and oxaliplatin response in patients with metastatic colorectal cancer Ladda ner fulltext (pdf) av High RBM3 expression is associated with an improved survival and oxaliplatin response in patients with metastatic colorectal cancer
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Mast Cell Infiltration in Human Brain Metastases Modulates the Microenvironment and Contributes to the Metastatic Potential
Ingår i Frontiers in Oncology, 2017.
DOI för Mast Cell Infiltration in Human Brain Metastases Modulates the Microenvironment and Contributes to the Metastatic Potential Ladda ner fulltext (pdf) av Mast Cell Infiltration in Human Brain Metastases Modulates the Microenvironment and Contributes to the Metastatic Potential
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Principles of Systems Biology, No. 21: Editorial
Ingår i CELL SYSTEMS, s. 158-160, 2017.
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Reaching the limits of prognostication in non-small cell lung cancer: an optimized biomarker panel fails to outperform clinical parameters.
Ingår i Modern Pathology, s. 964-977, 2017.
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Serglycin as a potential biomarker for glioma: association of serglycin expression, extent of mast cell recruitment and glioblastoma progression
Ingår i OncoTarget, s. 24815-24827, 2017.
DOI för Serglycin as a potential biomarker for glioma: association of serglycin expression, extent of mast cell recruitment and glioblastoma progression Ladda ner fulltext (pdf) av Serglycin as a potential biomarker for glioma: association of serglycin expression, extent of mast cell recruitment and glioblastoma progression
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Serotonin, ATRX, and DAXX Expression in Pituitary Adenomas: Markers in the Differential Diagnosis of Neuroendocrine Tumors of the Sellar Region.
Ingår i American Journal of Surgical Pathology, s. 1238-1246, 2017.
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Tumoral ANXA1 Is a Predictive Marker for Sunitinib Treatment of Renal Cancer Patients
Ingår i Journal of Cancer, s. 3975-3983, 2017.
DOI för Tumoral ANXA1 Is a Predictive Marker for Sunitinib Treatment of Renal Cancer Patients Ladda ner fulltext (pdf) av Tumoral ANXA1 Is a Predictive Marker for Sunitinib Treatment of Renal Cancer Patients
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Tumoral cubilin is a predictive marker for treatment of renal cancer patients with sunitinib and sorafenib
Ingår i Journal of Cancer Research and Clinical Oncology, s. 961-970, 2017.
DOI för Tumoral cubilin is a predictive marker for treatment of renal cancer patients with sunitinib and sorafenib Ladda ner fulltext (pdf) av Tumoral cubilin is a predictive marker for treatment of renal cancer patients with sunitinib and sorafenib
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A stromal cell population in the large intestine identified by tissue factor expression that is lost during colorectal cancer progression
Ingår i Thrombosis and Haemostasis, s. 1050-1059, 2016.
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ANLN is a prognostic biomarker independent of Ki-67 and essential for cell cycle progression in primary breast cancer
Ingår i BMC Cancer, 2016.
DOI för ANLN is a prognostic biomarker independent of Ki-67 and essential for cell cycle progression in primary breast cancer Ladda ner fulltext (pdf) av ANLN is a prognostic biomarker independent of Ki-67 and essential for cell cycle progression in primary breast cancer
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Extension of diffuse low-grade gliomas beyond radiological borders as shown by the coregistration of histopathological and magnetic resonance imaging data
Ingår i Journal of Neurosurgery, s. 1155-1166, 2016.
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Gene-specific correlation of RNA and protein levels in human cells and tissues
Ingår i Molecular Systems Biology, 2016.
DOI för Gene-specific correlation of RNA and protein levels in human cells and tissues Ladda ner fulltext (pdf) av Gene-specific correlation of RNA and protein levels in human cells and tissues
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GPR44 is a pancreatic protein restricted to the human beta cell
Ingår i Acta Diabetologica, s. 413-421, 2016.
DOI för GPR44 is a pancreatic protein restricted to the human beta cell
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Guidance Molecule SEMA3A Restricts Tumor Growth by Differentially Regulating the Proliferation of Tumor-Associated Macrophages
Ingår i Cancer Research, s. 3166-3178, 2016.
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Inconsistent results in the analysis of ALK rearrangements in non-small cell lung cancer
Ingår i BMC Cancer, 2016.
DOI för Inconsistent results in the analysis of ALK rearrangements in non-small cell lung cancer Ladda ner fulltext (pdf) av Inconsistent results in the analysis of ALK rearrangements in non-small cell lung cancer
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Long-term outcome in young women with breast cancer: a population-based study
Ingår i Breast Cancer Research and Treatment, s. 131-143, 2016.
DOI för Long-term outcome in young women with breast cancer: a population-based study Ladda ner fulltext (pdf) av Long-term outcome in young women with breast cancer: a population-based study
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Oncogene-Induced Senescence in Pituitary Adenomas-an Immunohistochemical Study.
Ingår i Endocrine pathology, s. 1-11, 2016.
DOI för Oncogene-Induced Senescence in Pituitary Adenomas-an Immunohistochemical Study.
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PROX1 is a novel pathway-specific prognostic biomarker for high-grade astrocytomas; results from independent glioblastoma cohorts stratified by age and IDH mutation status.
Ingår i OncoTarget, s. 72431-72442, 2016.
DOI för PROX1 is a novel pathway-specific prognostic biomarker for high-grade astrocytomas; results from independent glioblastoma cohorts stratified by age and IDH mutation status. Ladda ner fulltext (pdf) av PROX1 is a novel pathway-specific prognostic biomarker for high-grade astrocytomas; results from independent glioblastoma cohorts stratified by age and IDH mutation status.
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SATB2 is expressed in Merkel cell carcinoma
Ingår i Archives of Dermatological Research, s. 449-454, 2016.
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A prognosis based classification of undifferentiated uterine sarcomas: Identification of mitotic index, hormone receptors and YWHAE-FAM22 translocation status as predictors of survival
Ingår i International Journal of Cancer, s. 1608-1618, 2015.
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A Tissue-Based Map of the Human Proteome
Ingår i Scandinavian Journal of Immunology, s. 329-329, 2015.
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ALK Rearrangements in Non-Small Cell Lung Cancer: Comprehensive Integration of Genomic, Gene Expression and Protein Analysis
Ingår i Journal of Thoracic Oncology, s. S298-S298, 2015.
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Analysis of the Human Prostate-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling Identifies TMEM79 and ACOXL as Two Putative, Diagnostic Markers in Prostate Cancer
Ingår i PLOS ONE, 2015.
DOI för Analysis of the Human Prostate-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling Identifies TMEM79 and ACOXL as Two Putative, Diagnostic Markers in Prostate Cancer Ladda ner fulltext (pdf) av Analysis of the Human Prostate-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling Identifies TMEM79 and ACOXL as Two Putative, Diagnostic Markers in Prostate Cancer
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Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium
Ingår i Nucleic Acids Research, s. 6787-6798, 2015.
DOI för Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium Ladda ner fulltext (pdf) av Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium
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Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex
Ingår i PLOS ONE, 2015.
DOI för Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex Ladda ner fulltext (pdf) av Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex
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Elevated Expression of the C-Type Lectin CD93 in the Glioblastoma Vasculature Regulates Cytoskeletal Rearrangements That Enhance Vessel Function and Reduce Host Survival
Ingår i Cancer Research, s. 4504-4516, 2015.
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Expression of Human Skin-Specific Genes Defined by Transcriptomics and Antibody-Based Profiling
Ingår i Journal of Histochemistry and Cytochemistry, s. 129-141, 2015.
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FGF2 as a potential prognostic biomarker for proneural glioma patients
Ingår i Acta Oncologica, s. 385-394, 2015.
DOI för FGF2 as a potential prognostic biomarker for proneural glioma patients
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Glioma-derived plasminogen activator inhibitor-1 (PAI-1) regulates the recruitment of LRP1 positive mast cells
Ingår i OncoTarget, s. 23647-23661, 2015.
DOI för Glioma-derived plasminogen activator inhibitor-1 (PAI-1) regulates the recruitment of LRP1 positive mast cells Ladda ner fulltext (pdf) av Glioma-derived plasminogen activator inhibitor-1 (PAI-1) regulates the recruitment of LRP1 positive mast cells
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Prognostic impact of COX-2 in non-small cell lung cancer: A comprehensive compartment-specific evaluation of tumor and stromal cell expression
Ingår i Cancer Letters, s. 837-845, 2015.
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The Crux of Molecular Prognostications in NSCLC: An Optimized Biomarker Panel Fails to Outperform Clinical Parameters
Ingår i Journal of Thoracic Oncology, s. S712-S713, 2015.
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The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling
Ingår i BMC Genomics, 2015.
DOI för The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling Ladda ner fulltext (pdf) av The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling
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The human gastrointestinal tract-specific transcriptome and proteome as defined by RNA sequencing and antibody-based profiling.
Ingår i Journal of gastroenterology, s. 46-57, 2015.
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The Identification of Therapeutic Targets in Lung Cancer Based on Transcriptomic and Proteomic Characterization of Cancer-Testis Antigens
Ingår i Journal of Thoracic Oncology, s. S256-S256, 2015.
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The Urinary Bladder Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling
Ingår i PLOS ONE, 2015.
DOI för The Urinary Bladder Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling Ladda ner fulltext (pdf) av The Urinary Bladder Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling
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Tissue-based map of the human proteome
Ingår i Science, s. 394-+, 2015.
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Tumor Vessel Up-Regulation of INSR Revealed by Single-Cell Expression Analysis of the Tyrosine Kinome and Phosphatome in Human Cancers
Ingår i American Journal of Pathology, s. 1600-1609, 2015.