Publikationer i DiVA – Xingqi Chen

Heparanase Modulates Chromatin Accessibility

Li, Honglian; Zhang, Hua; Wenz, Amelie S.; Kang, Ziqi et al.

Ingår i Cells, 2023.

DOI för Heparanase Modulates Chromatin Accessibility Ladda ner fulltext (pdf) av Heparanase Modulates Chromatin Accessibility

A Highly Sensitive Method to Efficiently Profile the Histone Modifications of FFPE Samples

Zhao, Linxuan; Polavarapu, Vamsi Krishna; Yadav, Ram Prakash; Xing, Pengwei et al.

Ingår i Bio-protocol, 2022.

DOI för A Highly Sensitive Method to Efficiently Profile the Histone Modifications of FFPE Samples

BRD2 compartmentalizes the accessible genome

Xie, Liangqi; Dong, Peng; Qi, Yifeng; Hsieh, Tsung-Han S. et al.

Ingår i Nature Genetics, s. 481-491, 2022.

DOI för BRD2 compartmentalizes the accessible genome

Cell-lineage controlled epigenetic regulation in glioblastoma stem cells determines functionally distinct subgroups and predicts patient survival

Lu, Xi; Maturi, Naga Prathyusha; Jarvius, Malin; Yildirim, Irem et al.

Ingår i Nature Communications, 2022.

DOI för Cell-lineage controlled epigenetic regulation in glioblastoma stem cells determines functionally distinct subgroups and predicts patient survival Ladda ner fulltext (pdf) av Cell-lineage controlled epigenetic regulation in glioblastoma stem cells determines functionally distinct subgroups and predicts patient survival

Dormant SOX9-Positive Cells Facilitate MYC-Driven Recurrence of Medulloblastoma

Borgenvik, Anna; Holmberg, Karl O.; Bolin, Sara; Zhao, Miao et al.

Ingår i Cancer Research, s. 4586-4603, 2022.

DOI för Dormant SOX9-Positive Cells Facilitate MYC-Driven Recurrence of Medulloblastoma Ladda ner fulltext (pdf) av Dormant SOX9-Positive Cells Facilitate MYC-Driven Recurrence of Medulloblastoma

Epigenomic priming of immune genes implicates oligodendroglia in multiple sclerosis susceptibility

Meijer, Mandy; Agirre, Eneritz; Kabbe, Mukund; van Tuijn, Cassandra A. et al.

Ingår i Neuron, s. 1193-1210, 2022.

DOI för Epigenomic priming of immune genes implicates oligodendroglia in multiple sclerosis susceptibility Ladda ner fulltext (pdf) av Epigenomic priming of immune genes implicates oligodendroglia in multiple sclerosis susceptibility

Ferromagnetism with in-plane magnetization, Dirac spin-gapless semiconducting properties, and tunable topological states in two-dimensional rare-earth metal dinitrides

Yu, Yawei; Chen, Xingqi; Liu, Xiaobiao; Li, Jia et al.

Ingår i Physical Review B, 2022.

DOI för Ferromagnetism with in-plane magnetization, Dirac spin-gapless semiconducting properties, and tunable topological states in two-dimensional rare-earth metal dinitrides

Large Dzyaloshinskii-Moriya interaction and atomic layer thickness dependence in a ferromagnet-WS2 heterostructure

Husain, Sajid; Pal, Sreya; Chen, Xingqi; Kumar, Prabhat et al.

Ingår i Physical Review B, 2022.

DOI för Large Dzyaloshinskii-Moriya interaction and atomic layer thickness dependence in a ferromagnet-WS2 heterostructure

Profiling chromatin accessibility in formalin-fixed paraffin-embedded samples

Zhang, Hua; Polavarapu, Vamsi Krishna; Xing, Pengwei; Zhao, Miao et al.

Ingår i Genome Research, s. 150-161, 2022.

DOI för Profiling chromatin accessibility in formalin-fixed paraffin-embedded samples Ladda ner fulltext (pdf) av Profiling chromatin accessibility in formalin-fixed paraffin-embedded samples

Single-Cell Analysis Reveals Major Histocompatibility Complex II-Expressing Keratinocytes in Pressure Ulcers with Worse Healing Outcomes

Li, Dongqing; Cheng, Shangli; Pei, Yu; Sommar, Pehr et al.

Ingår i Journal of Investigative Dermatology, s. 705-716, 2022.

DOI för Single-Cell Analysis Reveals Major Histocompatibility Complex II-Expressing Keratinocytes in Pressure Ulcers with Worse Healing Outcomes Ladda ner fulltext (pdf) av Single-Cell Analysis Reveals Major Histocompatibility Complex II-Expressing Keratinocytes in Pressure Ulcers with Worse Healing Outcomes

Super-enhancers conserved within placental mammals maintain stem cell pluripotency

Zhang, Juqing; Zhou, Yaqi; Yue, Wei; Zhu, Zhenshuo et al.

Ingår i Proceedings of the National Academy of Sciences of the United States of America, 2022.

DOI för Super-enhancers conserved within placental mammals maintain stem cell pluripotency Ladda ner fulltext (pdf) av Super-enhancers conserved within placental mammals maintain stem cell pluripotency

FACT-seq: profiling histone modifications in formalin-fixed paraffin-embedded samples with low cell numbers

Zhao, Linxuan; Xing, Pengwei; Polavarapu, Vamsi Krishna; Zhao, Miao et al.

Ingår i Nucleic Acids Research, 2021.

DOI för FACT-seq: profiling histone modifications in formalin-fixed paraffin-embedded samples with low cell numbers Ladda ner fulltext (pdf) av FACT-seq: profiling histone modifications in formalin-fixed paraffin-embedded samples with low cell numbers

Focal amplifications are associated with chromothripsis events and diverse prognoses in gastric cardia adenocarcinoma

Zhao, Xue-Ke; Xing, Pengwei; Song, Xin; Zhao, Miao et al.

Ingår i Nature Communications, 2021.

DOI för Focal amplifications are associated with chromothripsis events and diverse prognoses in gastric cardia adenocarcinoma Ladda ner fulltext (pdf) av Focal amplifications are associated with chromothripsis events and diverse prognoses in gastric cardia adenocarcinoma

Histone demethylase complexes KDM3A and KDM3B cooperate with OCT4/SOX2 to define a pluripotency gene regulatory network

Zhu, Zhenshuo; Wu, Xiaolong; Li, Qun; Zhang, Juqing et al.

Ingår i The FASEB Journal, 2021.

DOI för Histone demethylase complexes KDM3A and KDM3B cooperate with OCT4/SOX2 to define a pluripotency gene regulatory network

Structural phase transition in monolayer gold(I) telluride: From a room-temperature topological insulator to an auxetic semiconductor

Chen, Xingqi; Esteban-Puyuelo, Raquel; Li, Linyang; Sanyal, Biplab

Ingår i Physical Review B, 2021.

DOI för Structural phase transition in monolayer gold(I) telluride: From a room-temperature topological insulator to an auxetic semiconductor Ladda ner fulltext (pdf) av Structural phase transition in monolayer gold(I) telluride: From a room-temperature topological insulator to an auxetic semiconductor

Super enhancers-Functional cores under the 3D genome

Zhang, Juqing; Yue, Wei; Zhou, Yaqi; Liao, Mingzhi et al.

Ingår i Cell Proliferation, 2021.

DOI för Super enhancers-Functional cores under the 3D genome Ladda ner fulltext (pdf) av Super enhancers-Functional cores under the 3D genome

The Thioesterase ACOT1 as a Regulator of Lipid Metabolism in Type 2 Diabetes Detected in a Multi-Omics Study of Human Liver

Cavalli, Marco; Diamanti, Klev; Dang, Yonglong; Xing, Pengwei et al.

Ingår i Omics, s. 652-659, 2021.

DOI för The Thioesterase ACOT1 as a Regulator of Lipid Metabolism in Type 2 Diabetes Detected in a Multi-Omics Study of Human Liver Ladda ner fulltext (pdf) av The Thioesterase ACOT1 as a Regulator of Lipid Metabolism in Type 2 Diabetes Detected in a Multi-Omics Study of Human Liver

3D ATAC-PALM: super-resolution imaging of the accessible genome

Xie, Liangqi; Dong, Peng; Chen, Xingqi; Hsieh, Tsung-Han S. et al.

Ingår i Nature Methods, s. 430-436, 2020.

DOI för 3D ATAC-PALM: super-resolution imaging of the accessible genome

Circular ecDNA promotes accessible chromatin and high oncogene expression

Wu, Sihan; Turner, Kristen M.; Nguyen, Nam; Raviram, Ramya et al.

Ingår i Nature, s. 699-703, 2019.

DOI för Circular ecDNA promotes accessible chromatin and high oncogene expression

Epigenetic Insights into GABAergic development in Dravet Syndrome iPSC and Therapeutic Implications

Schuster, Jens; Lu, Xi; Dang, Yonglong; Klar, Joakim et al.

Paired glioblastoma cell cultures of the fluorescent bulk tumor and non-fluorescent tumor margin display differential phenotypes and cell states across patients

Neves, Inês; Lu, Xi; Maturi, Nagaprathyusha; Dang, Yonglong et al.