Publications in DiVA – Xingqi Chen

Heparanase Modulates Chromatin Accessibility

Li, Honglian; Zhang, Hua; Wenz, Amelie S.; Kang, Ziqi et al.

Part of Cells, 2023.

DOI for Heparanase Modulates Chromatin Accessibility Download full text (pdf) of Heparanase Modulates Chromatin Accessibility

A Highly Sensitive Method to Efficiently Profile the Histone Modifications of FFPE Samples

Zhao, Linxuan; Polavarapu, Vamsi Krishna; Yadav, Ram Prakash; Xing, Pengwei et al.

Part of Bio-protocol, 2022.

DOI for A Highly Sensitive Method to Efficiently Profile the Histone Modifications of FFPE Samples

BRD2 compartmentalizes the accessible genome

Xie, Liangqi; Dong, Peng; Qi, Yifeng; Hsieh, Tsung-Han S. et al.

Part of Nature Genetics, p. 481-491, 2022.

DOI for BRD2 compartmentalizes the accessible genome

Cell-lineage controlled epigenetic regulation in glioblastoma stem cells determines functionally distinct subgroups and predicts patient survival

Lu, Xi; Maturi, Naga Prathyusha; Jarvius, Malin; Yildirim, Irem et al.

Part of Nature Communications, 2022.

DOI for Cell-lineage controlled epigenetic regulation in glioblastoma stem cells determines functionally distinct subgroups and predicts patient survival Download full text (pdf) of Cell-lineage controlled epigenetic regulation in glioblastoma stem cells determines functionally distinct subgroups and predicts patient survival

Dormant SOX9-Positive Cells Facilitate MYC-Driven Recurrence of Medulloblastoma

Borgenvik, Anna; Holmberg, Karl O.; Bolin, Sara; Zhao, Miao et al.

Part of Cancer Research, p. 4586-4603, 2022.

DOI for Dormant SOX9-Positive Cells Facilitate MYC-Driven Recurrence of Medulloblastoma Download full text (pdf) of Dormant SOX9-Positive Cells Facilitate MYC-Driven Recurrence of Medulloblastoma

Epigenomic priming of immune genes implicates oligodendroglia in multiple sclerosis susceptibility

Meijer, Mandy; Agirre, Eneritz; Kabbe, Mukund; van Tuijn, Cassandra A. et al.

Part of Neuron, p. 1193-1210, 2022.

DOI for Epigenomic priming of immune genes implicates oligodendroglia in multiple sclerosis susceptibility Download full text (pdf) of Epigenomic priming of immune genes implicates oligodendroglia in multiple sclerosis susceptibility

Ferromagnetism with in-plane magnetization, Dirac spin-gapless semiconducting properties, and tunable topological states in two-dimensional rare-earth metal dinitrides

Yu, Yawei; Chen, Xingqi; Liu, Xiaobiao; Li, Jia et al.

Part of Physical Review B, 2022.

DOI for Ferromagnetism with in-plane magnetization, Dirac spin-gapless semiconducting properties, and tunable topological states in two-dimensional rare-earth metal dinitrides

Large Dzyaloshinskii-Moriya interaction and atomic layer thickness dependence in a ferromagnet-WS2 heterostructure

Husain, Sajid; Pal, Sreya; Chen, Xingqi; Kumar, Prabhat et al.

Part of Physical Review B, 2022.

DOI for Large Dzyaloshinskii-Moriya interaction and atomic layer thickness dependence in a ferromagnet-WS2 heterostructure

Profiling chromatin accessibility in formalin-fixed paraffin-embedded samples

Zhang, Hua; Polavarapu, Vamsi Krishna; Xing, Pengwei; Zhao, Miao et al.

Part of Genome Research, p. 150-161, 2022.

DOI for Profiling chromatin accessibility in formalin-fixed paraffin-embedded samples Download full text (pdf) of Profiling chromatin accessibility in formalin-fixed paraffin-embedded samples

Single-Cell Analysis Reveals Major Histocompatibility Complex II-Expressing Keratinocytes in Pressure Ulcers with Worse Healing Outcomes

Li, Dongqing; Cheng, Shangli; Pei, Yu; Sommar, Pehr et al.

Part of Journal of Investigative Dermatology, p. 705-716, 2022.

DOI for Single-Cell Analysis Reveals Major Histocompatibility Complex II-Expressing Keratinocytes in Pressure Ulcers with Worse Healing Outcomes Download full text (pdf) of Single-Cell Analysis Reveals Major Histocompatibility Complex II-Expressing Keratinocytes in Pressure Ulcers with Worse Healing Outcomes

Super-enhancers conserved within placental mammals maintain stem cell pluripotency

Zhang, Juqing; Zhou, Yaqi; Yue, Wei; Zhu, Zhenshuo et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2022.

DOI for Super-enhancers conserved within placental mammals maintain stem cell pluripotency Download full text (pdf) of Super-enhancers conserved within placental mammals maintain stem cell pluripotency

FACT-seq: profiling histone modifications in formalin-fixed paraffin-embedded samples with low cell numbers

Zhao, Linxuan; Xing, Pengwei; Polavarapu, Vamsi Krishna; Zhao, Miao et al.

Part of Nucleic Acids Research, 2021.

DOI for FACT-seq: profiling histone modifications in formalin-fixed paraffin-embedded samples with low cell numbers Download full text (pdf) of FACT-seq: profiling histone modifications in formalin-fixed paraffin-embedded samples with low cell numbers

Focal amplifications are associated with chromothripsis events and diverse prognoses in gastric cardia adenocarcinoma

Zhao, Xue-Ke; Xing, Pengwei; Song, Xin; Zhao, Miao et al.

Part of Nature Communications, 2021.

DOI for Focal amplifications are associated with chromothripsis events and diverse prognoses in gastric cardia adenocarcinoma Download full text (pdf) of Focal amplifications are associated with chromothripsis events and diverse prognoses in gastric cardia adenocarcinoma

Histone demethylase complexes KDM3A and KDM3B cooperate with OCT4/SOX2 to define a pluripotency gene regulatory network

Zhu, Zhenshuo; Wu, Xiaolong; Li, Qun; Zhang, Juqing et al.

Part of The FASEB Journal, 2021.

DOI for Histone demethylase complexes KDM3A and KDM3B cooperate with OCT4/SOX2 to define a pluripotency gene regulatory network

Structural phase transition in monolayer gold(I) telluride: From a room-temperature topological insulator to an auxetic semiconductor

Chen, Xingqi; Esteban-Puyuelo, Raquel; Li, Linyang; Sanyal, Biplab

Part of Physical Review B, 2021.

DOI for Structural phase transition in monolayer gold(I) telluride: From a room-temperature topological insulator to an auxetic semiconductor Download full text (pdf) of Structural phase transition in monolayer gold(I) telluride: From a room-temperature topological insulator to an auxetic semiconductor

Super enhancers-Functional cores under the 3D genome

Zhang, Juqing; Yue, Wei; Zhou, Yaqi; Liao, Mingzhi et al.

Part of Cell Proliferation, 2021.

DOI for Super enhancers-Functional cores under the 3D genome Download full text (pdf) of Super enhancers-Functional cores under the 3D genome

The Thioesterase ACOT1 as a Regulator of Lipid Metabolism in Type 2 Diabetes Detected in a Multi-Omics Study of Human Liver

Cavalli, Marco; Diamanti, Klev; Dang, Yonglong; Xing, Pengwei et al.

Part of Omics, p. 652-659, 2021.

DOI for The Thioesterase ACOT1 as a Regulator of Lipid Metabolism in Type 2 Diabetes Detected in a Multi-Omics Study of Human Liver Download full text (pdf) of The Thioesterase ACOT1 as a Regulator of Lipid Metabolism in Type 2 Diabetes Detected in a Multi-Omics Study of Human Liver

3D ATAC-PALM: super-resolution imaging of the accessible genome

Xie, Liangqi; Dong, Peng; Chen, Xingqi; Hsieh, Tsung-Han S. et al.

Part of Nature Methods, p. 430-436, 2020.

DOI for 3D ATAC-PALM: super-resolution imaging of the accessible genome

Circular ecDNA promotes accessible chromatin and high oncogene expression

Wu, Sihan; Turner, Kristen M.; Nguyen, Nam; Raviram, Ramya et al.

Part of Nature, p. 699-703, 2019.

DOI for Circular ecDNA promotes accessible chromatin and high oncogene expression

Epigenetic Insights into GABAergic development in Dravet Syndrome iPSC and Therapeutic Implications

Schuster, Jens; Lu, Xi; Dang, Yonglong; Klar, Joakim et al.